Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0801851 with 563 members (calcyclin-binding protein)

Eukaryota /

Completeness score: 0.57

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

62.9%

This HOG has 581 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0801521	Eukaryota	7056		0.0%	1
HOG:E0990829	Bacteria	2504		100.0%	1
HOG:E0802451	Eukaryota	1110		95.3%	1
HOG:E0319299	Streptophyta	1041		99.1%	1
HOG:E0807992	Eukaryota	871		38.5%	1
HOG:E0801761	Eukaryota	704		98.9%	1
HOG:E0802840	Eukaryota	560		90.9%	1
HOG:E0807867	Eukaryota	407		94.6%	1
HOG:E0804684	Eukaryota	404		61.4%	1
HOG:E0317901	Streptophytina	380		99.7%	1
HOG:E0789298	Metazoa	330		97.3%	1
HOG:E0811244	Eukaryota	323		100.0%	1
HOG:E0777986	Eumetazoa	299		94.6%	1
HOG:E0805068	Eukaryota	298		4.0%	1
HOG:E0319443	Streptophyta	285		36.8%	1
HOG:E0276927	Mesangiospermae	263		6.8%	1
HOG:E0482808	Fungi	263		0.8%	1
HOG:E0740134	Euteleostomi	239		99.2%	1
HOG:E0804258	Eukaryota	234		85.0%	1
HOG:E0810532	Eukaryota	223		95.5%	1
HOG:E0477871	Ascomycota	212		100.0%	1
HOG:E0396571	Basidiomycota	186		100.0%	1
HOG:E0968009	f__Burkholderiaceae	184		100.0%	1
HOG:E0761072	Bilateria	183		45.4%	1
HOG:E0018237	Archaea	168		100.0%	1

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